About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7092708_7102691_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7092708 - 7102691
Intron Length:
9984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTGTCTGGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTCTTCATCC
Flanking Amino Acid:
MSNELDFRSVRLMKN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
62.5
0.28
1
61.3
40.1
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
58.6
0.25
1.8
71.86
39.3

Associated Gene:

Gene:
GRHL3
Ensembl Gene ID:
ENSAPLG00000003161
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003230
7092330 - 7120057
27728