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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7102879_7103583_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7102879 - 7103583
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
TGCCTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTAACAATAAAC
Flanking Amino Acid:
ALSLLYDYYMVPKEKRILPS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
34.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
73
0.52
0.9
65
41.2
Minor 5ss
47.7
-0.2
2.4
59.1
40.8
Minor BPS
45
-0.4
2
56.09
41.1

Associated Gene:

Gene:
GRHL3
Ensembl Gene ID:
ENSAPLG00000003161
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003230
7092330 - 7120057
27728