About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7116135_7119942_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7116135 - 7119942
Intron Length:
3808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTGTCTGACCC
Flanking Amino Acid:
IYKVYKKCKRGILVNMDNNI
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
68.7
0.42
0.9
62.2
34.4
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
49.2
-0
1.8
63.34
42.2

Associated Gene:

Gene:
GRHL3
Ensembl Gene ID:
ENSAPLG00000003161
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003230
7092330 - 7120057
27728