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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7123421_7126260_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7123421 - 7126260
Intron Length:
2840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAATG
Flanking Amino Acid:
GGSQEGFPGPDAYSPRALGK
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
68.9
0.45
1.7
72.41
40.7

Associated Gene:

Gene:
STPG1
Ensembl Gene ID:
ENSAPLG00000003159
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003197
7123344 - 7134871
11528