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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7140683_7142526_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7140683 - 7142526
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGTTT
5'SS Class:
major
3'SS Sequence:
TACTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTAAATTTAATA
Flanking Amino Acid:
QPHTDSFSYKENLIGALLAI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
79.5
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.4
0.86
0.7
83.4
31.3
Minor 5ss
38.1
-1.3
3.4
56
48.2
Minor BPS
55.7
0.18
1.5
62.91
37

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081