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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7142596_7142693_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7142596 - 7142693
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TGTACCTTTATT
Flanking Amino Acid:
LVISIALNLQKYSHIRLAGS
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.3
32.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
33.5
-1.9
3.1
44.4
43.7
Minor BPS
66.6
0.6
1.7
81.88
39.3

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081