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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7143031_7143725_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7143031 - 7143725
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTGGTCGCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ACCCTCTAACTG
Flanking Amino Acid:
KEKWKPKDFLRRYVLSFVGC
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
56.7
0.15
1.1
55.9
39.3
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
40.9
-0.8
1.8
37.57
39.9

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081