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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7143872_7144623_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7143872 - 7144623
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TACTCAATATCT
Flanking Amino Acid:
LVSWPFLLYMLLEIIVFCLL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
65.2
41.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.4
0.71
0.9
77.2
37.1
Minor 5ss
37.5
-1.4
3
44.3
45.4
Minor BPS
48.2
-0
2.1
71.61
44.6

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081