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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7145092_7145748_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7145092 - 7145748
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
CATTGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCATCTGTCATT
Flanking Amino Acid:
CMIATAVFQATFLAQASQLY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
66.9
40
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
76.9
0.61
0.9
70
39.8
Minor 5ss
39.7
-1.2
3.1
50.1
39.9
Minor BPS
46.5
-0.1
2.3
67.65
44.2

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081