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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7145838_7147052_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7145838 - 7147052
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATTAT
U12 Branch Point Sequence:
AAAGCATGAATT
Flanking Amino Acid:
ILSTTIAITAGATFYLDFTG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
59.2
0.23
1.3
52
43.5
Major PPT
83.1
0.74
0.9
82.8
32.6
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
47.9
-0
1.8
63.03
40.6

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081