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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7147117_7148188_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7147117 - 7148188
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACTAGAACT
Flanking Amino Acid:
DVLHICMFALGCLIAFLGVF
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
48.1
-0
1.8
66.31
44.2

Associated Gene:

Gene:
NIPAL3
Ensembl Gene ID:
ENSAPLG00000002628
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002664
7140242 - 7149322
9081