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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7158191_7160738_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7158191 - 7160738
Intron Length:
2548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATGTTTAAAG
Flanking Amino Acid:
EAVFEVQEEKERFEALFTVY
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.4
0.5
0.8
63.4
37.8
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
56.8
0.07
1.9
65.31
42.5

Associated Gene:

Gene:
RCAN3
Ensembl Gene ID:
ENSAPLG00000002545
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031866
7155874 - 7162572
6699
ENSAPLT00000017973
7153587 - 7163388
9802
ENSAPLT00000002568
7157948 - 7163065
5118
ENSAPLT00000037586
7157051 - 7162572
5522