About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7161646_7162363_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7161646 - 7162363
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATA
5'SS Class:
strong_major
3'SS Sequence:
TGCCGCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
ATGTTCTTAGTA
Flanking Amino Acid:
LLCAVSKLGPGEKYELHAGT
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.7
37.2
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
76.6
0.6
0.9
72.6
37.6
Minor 5ss
34.4
-1.8
3.5
47.6
48.1
Minor BPS
62.3
0.38
1.5
69.05
37.9

Associated Gene:

Gene:
RCAN3
Ensembl Gene ID:
ENSAPLG00000002545
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017973
7153587 - 7163388
9802
ENSAPLT00000002568
7157948 - 7163065
5118
ENSAPLT00000037586
7157051 - 7162572
5522
ENSAPLT00000031866
7155874 - 7162572
6699