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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7162549_7163050_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7162549 - 7163050
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
TTGCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACCTTCTGAAGT
Flanking Amino Acid:
ESKAFDCTLEMCLI*
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
69.2
38.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.9
0.79
0.8
84.1
30.8
Minor 5ss
29.5
-2.3
3.8
46.4
49
Minor BPS
51.5
0.13
1.8
66.24
44.6

Associated Gene:

Gene:
RCAN3
Ensembl Gene ID:
ENSAPLG00000002545
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002568
7157948 - 7163065
5118