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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7162549_7163106_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7162549 - 7163106
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
AAATTCTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGGAACTAAATT
Flanking Amino Acid:
ESKAFDCTLEFAELLEEYRR
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
69.2
38.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
64.7
0.33
1
59.3
41.8
Minor 5ss
29.5
-2.3
3.8
46.4
49
Minor BPS
48.9
-0
1.9
66.42
44.2

Associated Gene:

Gene:
RCAN3
Ensembl Gene ID:
ENSAPLG00000002545
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017973
7153587 - 7163388
9802