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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7177139_7177548_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7177139 - 7177548
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAAGA
Flanking Amino Acid:
TKSQEQSLYQSSGAIVAAIV
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.5
0.44
1
61.9
39.9
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
47.5
-0.1
2.3
70.89
40.6

Associated Gene:

Gene:
NCMAP
Ensembl Gene ID:
ENSAPLG00000002541
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002551
7177044 - 7178926
1883