Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7177634_7177778_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7177634 - 7177778

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGT

5'SS Class:

strong_major

3'SS Sequence:

GCTCCCTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

GATGCTTTCATT

Flanking Amino Acid:

VVLLILKTYNRRMRVKRELE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

77.9

36.9

Major BPS

87.6

0.93

0.9

89.3

Major PPT

78.4

0.64

0.8

68.8

37.1

Minor 5ss

40.5

-1.1

3.2

58.3

46.4

Minor BPS

51.8

0.14

1.8

69.25

42.3

Associated Gene:

Gene:

NCMAP

Ensembl Gene ID:

ENSAPLG00000002541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002551

7177044 - 7178926

1883