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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7188705_7190777_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7188705 - 7190777
Intron Length:
2073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TATCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CCTGTCATATCT
Flanking Amino Acid:
EFIFNQLEVKNPDSKMMQIN
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86.3
0.82
0.7
80.9
30.6
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
46.4
-0.2
2
63.58
46.9

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002285
7188582 - 7201869
13288