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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7191905_7192399_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7191905 - 7192399
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
ETVVQEATSNSDIPKAPKSE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80
0.67
0.9
77.6
35.5
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021602
7188582 - 7201855
13274
ENSAPLT00000002285
7188582 - 7201869
13288