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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7192604_7193168_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7192604 - 7193168
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GAATTTTTGATT
Flanking Amino Acid:
RPRRRHRSRSRRRPSPRRRP
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
0.8
65.8
35.8
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
60
0.4
1.2
68.32
36.7

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002285
7188582 - 7201869
13288
ENSAPLT00000021602
7188582 - 7201855
13274