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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7196453_7197018_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7196453 - 7197018
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
CCACTGCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTAGAT
U12 Branch Point Sequence:
TTTTCCTCCACT
Flanking Amino Acid:
PRKRQKESSPRMQMEKRWQS
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
74.6
36.2
Major BPS
61.4
0.28
1.3
60.7
45.9
Major PPT
64.9
0.34
1
62.2
38.4
Minor 5ss
43.4
-0.7
2.8
60.6
43.6
Minor BPS
70.4
0.72
2
92.41
36.6

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002285
7188582 - 7201869
13288