About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7196453_7198521_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7196453 - 7198521
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
TTTATCTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
ATCCCTTTATCT
Flanking Amino Acid:
PRKRQKESSPRRRRRSPSPP
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
74.6
36.2
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
79.1
0.65
0.7
78.1
30.6
Minor 5ss
43.4
-0.7
2.8
60.6
43.6
Minor BPS
61.4
0.44
1.6
75.56
41.3

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021602
7188582 - 7201855
13274