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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7197061_7198521_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7197061 - 7198521
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTAG
5'SS Class:
major
3'SS Sequence:
TTTATCTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
ATCCCTTTATCT
Flanking Amino Acid:
EKRWQSPVMKSRRRRSPSPP
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67
41
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
79.1
0.65
0.7
78.1
30.6
Minor 5ss
34.5
-1.8
2.9
40.4
45.9
Minor BPS
61.4
0.44
1.6
75.56
41.3

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002285
7188582 - 7201869
13288