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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7199424_7200371_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7199424 - 7200371
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTGTTTTCAAG
Flanking Amino Acid:
VSRTPEPKKTKASTPSPRSA
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
73.1
30.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.2
0.59
1
74.8
39.1
Minor 5ss
33.9
-1.8
3
40.1
40
Minor BPS
45
-0.5
2
50.95
44.1

Associated Gene:

Gene:
SRRM1
Ensembl Gene ID:
ENSAPLG00000002066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021602
7188582 - 7201855
13274
ENSAPLT00000002285
7188582 - 7201869
13288