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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7243102_7244417_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7243102 - 7244417
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTT
Flanking Amino Acid:
EFLEDVLAPPKYLKLSPKHP
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.4
0.73
0.7
81.5
30
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
63.3
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
CLIC4
Ensembl Gene ID:
ENSAPLG00000019742
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044495
7237362 - 7248470
11109
ENSAPLT00000032245
7234972 - 7247160
12189
ENSAPLT00000017452
7236252 - 7247160
10909