About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7244525_7245871_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7244525 - 7245871
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAAAG
Flanking Amino Acid:
IKNSRPEANEALERGLLKTL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.9
0.51
0.8
69.6
29.7
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
71.1
0.53
1.5
72.17
40.6

Associated Gene:

Gene:
CLIC4
Ensembl Gene ID:
ENSAPLG00000019742
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044495
7237362 - 7248470
11109
ENSAPLT00000032245
7234972 - 7247160
12189
ENSAPLT00000017452
7236252 - 7247160
10909