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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7287805_7298128_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7287805 - 7298128
Intron Length:
10324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
CCCAACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AGTGCTCTAACC
Flanking Amino Acid:
FGSQAQTPIQGTSDLSPFSD
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
61.9
0.27
0.9
53.7
30.5
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
55
0.14
1.8
66.19
39.3

Associated Gene:

Gene:
RUNX3
Ensembl Gene ID:
ENSAPLG00000016439
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017158
7287281 - 7345606
58326