Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7315973_7320855_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7315973 - 7320855

Intron Length:

4883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAGGTATC

5'SS Class:

major

3'SS Sequence:

CCCCTTCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

ATGTGAATATCC

Flanking Amino Acid:

DLRFVGRSGRGKSFTLTITV

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

1.1

76.2

39.9

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

70.5

0.46

0.7

68.8

Minor 5ss

38.5

-1.3

3.1

45.5

42.9

Minor BPS

40.6

-0.7

2.3

54.9

42.9

Associated Gene:

Gene:

RUNX3

Ensembl Gene ID:

ENSAPLG00000016439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017158

7287281 - 7345606

58326