Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7355128_7358310_R

Intron Information:

Intron Rank:

140606

Intron Class:

major

Intron Phase:

Intron Coordinates:

7355128 - 7358310

Intron Length:

3183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

CAGGGCTGATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

71.1

40.4

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

75.9

0.58

0.8

68.9

31.6

Minor 5ss

32.6

-2

3.1

35.3

41.4

Minor BPS

39.5

-0.7

49.13

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034570

7354964 - 7358923

3960