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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7388855_7388970_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7388855 - 7388970
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTCACCTTAGCA
Flanking Amino Acid:
KRKNPDLGFSDYAAAQLRQY
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
76.7
0.6
1
78.7
27.4
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
67.8
0.55
1.6
76.26
40.9

Associated Gene:

Gene:
SYF2
Ensembl Gene ID:
ENSAPLG00000016435
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017153
7388059 - 7390269
2211