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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7388855_7389652_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7388855 - 7389652
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TCCCCTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTATGTAAACT
Flanking Amino Acid:
KRKNPDLGFSVVKHCTQHLT
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
71.8
0.49
0.9
67.6
32.3
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
48
-0
2.3
72.79
44.1

Associated Gene:

Gene:
SYF2
Ensembl Gene ID:
ENSAPLG00000016435
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039469
7388059 - 7390269
2211