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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7389062_7389652_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7389062 - 7389652
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TCCCCTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTATGTAAACT
Flanking Amino Acid:
LEQYEKLKEQYGEALYPTSD
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
71.8
0.49
0.9
67.6
32.3
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
48
-0
2.3
72.79
44.1

Associated Gene:

Gene:
SYF2
Ensembl Gene ID:
ENSAPLG00000016435
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017153
7388059 - 7390269
2211