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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7391654_7391749_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
7391654 - 7391749
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGTCT
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGATCTTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
70.9
35.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
34.1
-1.8
3.3
44.7
44.3
Minor BPS
74.4
0.85
1.1
80.06
35.7

Associated Gene:

Gene:
RSRP1
Ensembl Gene ID:
ENSAPLG00000023561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024679
7391451 - 7396125
4675