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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7396694_7397041_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7396694 - 7397041
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAATA
Flanking Amino Acid:
AIASVAAGVLFFTGWWIIID
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.8
81
29.6
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
75.3
0.79
1.1
78
33.3

Associated Gene:

Gene:
TMEM50A
Ensembl Gene ID:
ENSAPLG00000016434
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017152
7396526 - 7399931
3406