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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7398550_7399540_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7398550 - 7399540
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACTTCTGAAGA
Flanking Amino Acid:
WILFGGYVVKEKTVVYPGIA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.6
0.76
0.7
82.3
29.8
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
54.6
0.14
1.8
64.8
41.6

Associated Gene:

Gene:
TMEM50A
Ensembl Gene ID:
ENSAPLG00000016434
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017152
7396526 - 7399931
3406