Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7399602_7399885_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7399602 - 7399885

Intron Length:

284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCCTA

5'SS Class:

major

3'SS Sequence:

TTGTTTTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TTGTTTTAAACA

Flanking Amino Acid:

VFFQNAFIFFGGLVFKFGRT

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

68.9

43.8

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

76.5

0.6

74.1

39.5

Minor 5ss

-1

3.1

48.3

47.3

Minor BPS

64.2

0.44

1.6

74.03

38.5

Associated Gene:

Gene:

TMEM50A

Ensembl Gene ID:

ENSAPLG00000016434

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017152

7396526 - 7399931

3406