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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7402580_7404256_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7402580 - 7404256
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCTGATAC
Flanking Amino Acid:
SVALITGFITVSPFGRWILN
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
48
-0.1
1.8
59.83
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016375
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017094
7402545 - 7409970
7426