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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7405265_7405495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7405265 - 7405495
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGTCAGTTAAAC
Flanking Amino Acid:
ITILGSFCLQRCLNPALKIH
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
87.8
0.85
0.7
80.3
31.7
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
47
-0.2
2.3
63.42
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016375
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034868
7402553 - 7411519
8967
ENSAPLT00000024393
7402553 - 7411519
8967
ENSAPLT00000017094
7402545 - 7409970
7426