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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7405634_7405950_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7405634 - 7405950
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
LTTKDGKFRMTHVHSAALAG
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016375
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034868
7402553 - 7411519
8967
ENSAPLT00000024393
7402553 - 7411519
8967
ENSAPLT00000017094
7402545 - 7409970
7426