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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7408450_7408666_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7408450 - 7408666
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATTATT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
PKETKERDPKIITMAAVSMT
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
85.7
30.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.6
0.82
0.7
80.9
29.7
Minor 5ss
44.2
-0.6
2.9
65.1
39
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016375
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034868
7402553 - 7411519
8967
ENSAPLT00000024393
7402553 - 7411519
8967
ENSAPLT00000017094
7402545 - 7409970
7426