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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7422279_7424890_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7422279 - 7424890
Intron Length:
2612

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCGTGCAAC
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
SVAENTFLYLKFLV
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.2
58.9
43.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
31.7
-2.1
3.9
42.2
39.3
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103