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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7425033_7425725_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7425033 - 7425725
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCTCCCCTACCC
Flanking Amino Acid:
VYDSFRYQGLAFSVFFVCVA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
52.6
0.06
2
68.8
42.6

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103