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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7427976_7430152_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7427976 - 7430152
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAACA
Flanking Amino Acid:
VDLCRPFAAHCIGYPVVTLG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.9
0.65
0.8
72.7
37.5
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
53.5
0.11
2.3
77.79
38.6

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103