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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7431318_7438471_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7431318 - 7438471
Intron Length:
7154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAATT
Flanking Amino Acid:
NQLSKPDALVRLEQDIKKLK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.4
0.57
0.8
74.5
35
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
54.3
0.21
1.9
76.08
41.4

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103