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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7439009_7439801_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7439009 - 7439801
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTGGT
5'SS Class:
major
3'SS Sequence:
GTTTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
ARAVAFAAATRGECTETLRN
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
69
42.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
80.9
31.3
Minor 5ss
33.1
-1.9
3.5
49.7
46.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103