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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7441057_7442164_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7441057 - 7442164
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGG
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TGGTTCTAAGCG
Flanking Amino Acid:
DAKRQLEIAQGQIIQKDQEI
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
65.3
41.4
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
86.6
0.82
0.9
84.6
36
Minor 5ss
37.4
-1.4
3
48.1
47.4
Minor BPS
48.1
-0.2
2
55.34
46

Associated Gene:

Gene:
MACO1
Ensembl Gene ID:
ENSAPLG00000016308
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017024
7422265 - 7442367
20103