Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7455541_7458614_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7455541 - 7458614

Intron Length:

3074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTAGTCCA

5'SS Class:

major

3'SS Sequence:

ACTGTCTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TACTGCCTAACC

Flanking Amino Acid:

HAFLCTKRKMAQAVTLTVAQ

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

65.4

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

0.65

0.9

69.5

41.1

Minor 5ss

-2.2

2.6

32.6

35.1

Minor BPS

53.4

0.09

2.1

68.24

Associated Gene:

Gene:

LDLRAP1

Ensembl Gene ID:

ENSAPLG00000016262

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016971

7451472 - 7466113

14642