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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7458688_7459258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7458688 - 7459258
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
TTTGCCAGCAGT
Flanking Amino Acid:
AFEFWQASKEEKEKRERSVL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
89.3
0.88
0.6
87.5
22.7
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
42.7
-0.4
2.4
69.52
46.9

Associated Gene:

Gene:
LDLRAP1
Ensembl Gene ID:
ENSAPLG00000016262
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016971
7451472 - 7466113
14642