Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7459343_7460691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7459343 - 7460691

Intron Length:

1349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTCAC

5'SS Class:

major

3'SS Sequence:

TTGCTCACAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TCTTTGCTCACA

Flanking Amino Acid:

NLDAHACPDTPVTANLLDLE

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.3

72.3

39.5

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

68.8

0.42

64.3

36.5

Minor 5ss

35.9

-1.6

2.9

43.9

36.8

Minor BPS

43.4

-0.5

2.6

62.87

43.8

Associated Gene:

Gene:

LDLRAP1

Ensembl Gene ID:

ENSAPLG00000016262

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016971

7451472 - 7466113

14642