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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7462242_7464058_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7462242 - 7464058
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
MDDGLDEAFSRLAQSRTNPH
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.7
77.5
24.4
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
LDLRAP1
Ensembl Gene ID:
ENSAPLG00000016262
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016971
7451472 - 7466113
14642